Publications

Kaian Teles, Vinícius Fernandes, Isabel Silva, Manuela Leite, Cesar Grisolia, Vincenzo R. Lobbia, Hugo van Ingen, Rodrigo Honorato, Paulo Lopes de Oliveira, Werner Treptow, Guilherme Santos

Biomedicine & Pharmacotherapy

2019

Coevolutive, Evolutive and Stochastic Information in Protein-Protein Interactions

Miguel Andrade, Camila Pontes, Werner Treptow

Computational and Structural Biotechnology Journal

2018

Atomistic Model for Simulations of the Sedative Hypnotic Drug 2,2,2-Trichloroethanol

Alessandra Kiametis, Letícia Stock, Leonardo Cirqueira, Werner Treptow

ACS Omega

Binding of the general anesthetic sevoflurane to ion channels

Letícia Stock, Juliana Hosoume, Leonardo Cirqueira, Werner Treptow

PLOS Computational Biology

Fat nucleosome: role of lipids on chromatin

Vinícius Fernandes, Kaian Teles, Camyla Ribeiro, Werner Treptow, Guilherme M Santos

Progress in Lipid Research

2017

Biophysical studies of cholesterol effects on chromatin

Isabel TG Silva, Vinícius Fernandes, Caio Souza, Werner Treptow, Guilherme M Santos

Journal of lipid research

Concentration-Dependent Binding of Small Ligands to Multiple Saturable Sites in Membrane Proteins

Letícia Stock, Juliana Hosoume, Werner Treptow

Scientific Reports

2016

Information and redundancy in the burial folding code of globular proteins within a wide range of shapes and sizes

Diogo C Ferreira, Marx G van der Linden, Leandro C de Oliveira, José N Onuchic, Antônio FP de Araújo

Proteins

2015

Positive allosteric modulation of Kv channels by sevoflurane: Insights into the structural basis of inhaled anesthetic action

Qiansheng Liang, Warren D Anderson, Shelly T Jones, Caio S Souza, Juliana M Hosoume, Werner Treptow, Manuel Covarrubias

PloS one

Mechanistic insights into the modulation of voltage-gated ion channels by inhalational anesthetics

Manuel Covarrubias, Annika F Barber, Vincenzo Carnevale, Werner Treptow, Roderic G Eckenhoff

Biophysical journal

2014

Electric fingerprint of voltage sensor domains

Caio S Souza, Cristiano Amaral, Werner Treptow

Proceedings of the National Academy of Sciences

2013

Ab initio protein folding simulations using atomic burials as informational intermediates between sequence and structure

Marx G van der Linden, Diogo C Ferreira, Leandro C de Oliveira, José N Onuchic, Antônio FP de Araújo

Proteins

Pore waters regulate ion permeation in a calcium release-activated calcium channel

Hao Dong, Giacomo Fiorin, Vincenzo Carnevale, Werner Treptow, Michael L Klein

Proceedings of the National Academy of Sciences

Conduction in a biological sodium selective channel

Letícia Stock, Lucie Delemotte, Vincenzo Carnevale, Werner Treptow, Michael L Klein

The journal of physical chemistry B

Structural basis for activation of voltage-gated cation channels

Letícia Stock, Caio Souza, Werner Treptow

Biochemistry

2012

Information-theoretic analysis and prediction of protein atomic burials: On the search for an informational intermediate between sequence and structure

Juliana R Rocha, Marx G van der Linden, Diogo C Ferreira, Paulo H Azevêdo, Antônio FP de Araújo

Bioinformatics

Exploring conformational states of the bacterial voltage-gated sodium channel NavAb via molecular dynamics simulations

Cristiano Amaral, Vincenzo Carnevale, Michael L Klein, Werner Treptow

Proceedings of the National Academy of Sciences

Hinge-bending motions in the pore domain of a bacterial voltage-gated sodium channel

Annika F Barber, Vincenzo Carnevale, SG Raju, Cristiano Amaral, Werner Treptow, Michael L Klein

Biochimica et Biophysica Acta (BBA)-Biomembranes

Computer simulations of voltage-gated cation channels

Werner Treptow, Michael L Klein

The journal of physical chemistry letters

2011

Molecular mapping of general anesthetic sites in a voltage-gated ion channel

Annika F Barber, Qiansheng Liang, Cristiano Amaral, Werner Treptow, Manuel Covarrubias

Biophysical journal

Sodium ion binding sites and hydration in the lumen of a bacterial ion channel from molecular dynamics simulations

Vincenzo Carnevale, Werner Treptow, Michael L Klein

American Chemical Society

Intermediate states of the Kv1. 2 voltage sensor from atomistic molecular dynamics simulations

Lucie Delemotte, Mounir Tarek, Michael L Klein, Cristiano Amaral, Werner Treptow

Proceedings of the National Academy of Sciences

2010

Effect of sensor domain mutations on the properties of voltage-gated ion channels: molecular dynamics studies of the potassium channel Kv1. 2

Lucie Delemotte, Werner Treptow, Michael L Klein, Mounir Tarek

Biophysical journal

Affinity of C60 neat fullerenes with membrane proteins: a computational study on potassium channels

Sebastian Kraszewski, Mounir Tarek, Werner Treptow, Christophe Ramseyer

American Chemical Society

The membrane-bound state of K2P potassium channels

Werner Treptow, Michael L Klein

Journal of the American Chemical Society

2009

A sequence-compatible amount of native burial information is sufficient for determining the structure of small globular proteins

Antônio FP de Araújo, José N Onuchic

Proceedings of the National Academy of Sciences

Self assembly of peptides near or within membranes using coarse grained MD simulations

A Khalfa, W Treptow, Bernard Maigret, M Tarek

Chemical Physics

Initial response of the potassium channel voltage sensor to a transmembrane potential

Werner Treptow, Mounir Tarek, Michael L Klein

Journal of the American Chemical Society

2008

Increasing discrepancy between absolute and effective indexes of research output in a Brazilian academic department

Antônio FP de Araújo

Scientometrics

Native atomic burials, supplemented by physically motivated hydrogen bond constraints, contain sufficient information to determine the tertiary structure of small globular proteins

Antônio FP de Araújo, Antonio LC Gomes, Alexandre A Bursztyn, Eugene I Shakhnovich

Proteins